txid8355[Organism:exp] AND (structure_cdd_superfamily_2[filt]) - Structure - NCBI

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Select item 2281511.

Molecular Structure Image for 8G86

Human Oct4 bound to nucleosome with human nMatn1 sequence (focused refinement of nucleosome)[DNA BINDING PROTEIN/DNA]

Taxonomy:: Xenopus laevis, Xenopus laevis laevis, Homo sapiens

Proteins:: 8
Nucleic acids:: (DNA)
modified:: 2023-07-27

MMDB ID:: 228151
PDB ID:: 8G86

View in iCn3D Similar Structures PubMed Proteins Conserved Domains

Select item 2450872.

Molecular Structure Image for 8ETT

Class1 of the INO80-Hexasome complex[STRUCTURAL PROTEIN/DNA]

Taxonomy:: Xenopus laevis, synthetic construct

Proteins:: 6
Nucleic acids:: (DNA)
modified:: 2024-04-03

MMDB ID:: 245087
PDB ID:: 8ETT

View in iCn3D PubMed Proteins Conserved Domains

Select item 2350243.

Molecular Structure Image for 3C1C

The effect of H3 K79 dimethylation and H4 K20 trimethylation on nucleosome and chromatin structure[Structural PROTEIN/DNA]

Taxonomy:: Xenopus laevis, Xenopus tropicalis, synthetic construct

Proteins:: 8
Nucleic acids:: (DNA)
modified:: 2023-11-18

MMDB ID:: 235024
PDB ID:: 3C1C

View in iCn3D Similar Structures PubMed Proteins Conserved Domains

Select item 2343434.

Molecular Structure Image for 8PEP

H3K36me2 nucleosome-LEDGF/p75 PWWP domain complex - pose 2[TRANSCRIPTION]

Taxonomy:: Xenopus laevis, synthetic construct, Homo sapiens

Proteins:: 10
Nucleic acids:: (DNA)
modified:: 2023-11-18

MMDB ID:: 234343
PDB ID:: 8PEP

View in iCn3D Similar Structures PubMed Proteins Conserved Domains

Select item 2343425.

Molecular Structure Image for 8PEO

H3K36me2 nucleosome-LEDGF/p75 PWWP domain complex[TRANSCRIPTION]

Taxonomy:: Xenopus laevis, synthetic construct, Homo sapiens

Proteins:: 9
Nucleic acids:: (DNA)
Chemicals:: 1
modified:: 2023-11-21

MMDB ID:: 234342
PDB ID:: 8PEO

View in iCn3D Similar Structures PubMed Proteins Conserved Domains PubChem Compound

Select item 2343406.

Molecular Structure Image for 8PC6

H3K36me3 nucleosome-LEDGF/p75 PWWP domain complex - pose 2[TRANSCRIPTION]

Taxonomy:: synthetic construct, Xenopus laevis, Homo sapiens

Proteins:: 10
Nucleic acids:: (DNA)
modified:: 2023-11-18

MMDB ID:: 234340
PDB ID:: 8PC6

View in iCn3D Similar Structures PubMed Proteins Conserved Domains

Select item 2343397.

Molecular Structure Image for 8PC5

H3K36me3 nucleosome-LEDGF/p75 PWWP domain complex[TRANSCRIPTION]

Taxonomy:: synthetic construct, Xenopus laevis, Homo sapiens

Proteins:: 9
Nucleic acids:: (DNA)
modified:: 2023-11-18

MMDB ID:: 234339
PDB ID:: 8PC5

View in iCn3D Similar Structures PubMed Proteins Conserved Domains

Select item 2340618.

Molecular Structure Image for 7YRD

histone methyltransferase[GENE REGULATION]

Taxonomy:: Xenopus laevis, Homo sapiens

Proteins:: 9
Nucleic acids:: (DNA)
Chemicals:: 2
modified:: 2023-12-18

MMDB ID:: 234061
PDB ID:: 7YRD

View in iCn3D Similar Structures PubMed Proteins Conserved Domains PubChem Compound

Select item 2339489.

Molecular Structure Image for 8OF4

Nucleosome Bound human SIRT6 (Composite)[GENE REGULATION]

Taxonomy:: Xenopus laevis, Homo sapiens

Proteins:: 9
Nucleic acids:: (DNA)
Chemicals:: 1
modified:: 2024-03-21

MMDB ID:: 233948
PDB ID:: 8OF4

View in iCn3D Similar Structures PubMed Proteins Conserved Domains PubChem Compound

Select item 23371510.

Molecular Structure Image for 7UX9

Arabidopsis DDM1 bound to nucleosome (H2A.W, H2B, H3.3, H4, with 147 bp DNA)[GENE REGULATION]

Taxonomy:: Arabidopsis thaliana, Xenopus laevis, synthetic construct

Proteins:: 9
Nucleic acids:: (DNA)
modified:: 2023-09-28

MMDB ID:: 233715
PDB ID:: 7UX9

View in iCn3D Similar Structures PubMed Proteins Conserved Domains

Select item 23367011.

Molecular Structure Image for 8SIY

Origin Recognition Complex Associated (ORCA) protein bound to H4K20me3-nucleosome[REPLICATION]

Taxonomy:: Rattus norvegicus, Xenopus laevis, synthetic construct

Proteins:: 10
Nucleic acids:: (DNA)
modified:: 2023-11-18

MMDB ID:: 233670
PDB ID:: 8SIY

View in iCn3D Similar Structures PubMed Proteins Conserved Domains

Select item 23155412.

Molecular Structure Image for 7YI5

Cryo-EM structure of Rpd3S complex bound to H3K36me3 nucleosome in loose state[GENE REGULATION]

Taxonomy:: Saccharomyces cerevisiae S288C, Xenopus laevis, synthetic construct

Proteins:: 14
Nucleic acids:: (DNA)
Chemicals:: 5
modified:: 2023-09-06

MMDB ID:: 231554
PDB ID:: 7YI5

View in iCn3D Similar Structures PubMed Proteins Conserved Domains PubChem Compound

Select item 23155313.

Molecular Structure Image for 7YI4

Cryo-EM structure of Rpd3S complex bound to H3K36me3 nucleosome in close state[GENE REGULATION]

Taxonomy:: Saccharomyces cerevisiae S288C, Xenopus laevis, synthetic construct

Proteins:: 14
Nucleic acids:: (DNA)
Chemicals:: 5
modified:: 2023-09-06

MMDB ID:: 231553
PDB ID:: 7YI4

View in iCn3D Similar Structures PubMed Proteins Conserved Domains PubChem Compound

Select item 23155014.

Molecular Structure Image for 7YI1

Cryo-EM structure of Eaf3 CHD bound to H3K36me3 nucleosome[GENE REGULATION]

Taxonomy:: Xenopus laevis, synthetic construct, Saccharomyces cerevisiae S288C

Proteins:: 10
Nucleic acids:: (DNA)
modified:: 2023-08-31

MMDB ID:: 231550
PDB ID:: 7YI1

View in iCn3D Similar Structures PubMed Proteins Conserved Domains

Select item 23112815.

Molecular Structure Image for 8CZE

Structure of a Xenopus Nucleosome with Widom 601 DNA[DNA BINDING PROTEIN/DNA]

Taxonomy:: Xenopus laevis, Escherichia coli

Proteins:: 8
Nucleic acids:: (DNA)
modified:: 2024-04-10

MMDB ID:: 231128
PDB ID:: 8CZE

View in iCn3D Similar Structures PubMed Proteins Conserved Domains

Select item 23112116.

Molecular Structure Image for 8CWW

Structure of S. cerevisiae Hop1 CBR bound to a nucleosome[DNA BINDING PROTEIN/DNA]

Taxonomy:: Saccharomyces cerevisiae, Xenopus laevis, Escherichia coli

Proteins:: 9
Nucleic acids:: (DNA)
Chemicals:: 2
modified:: 2024-04-15

MMDB ID:: 231121
PDB ID:: 8CWW

View in iCn3D Similar Structures PubMed Proteins Conserved Domains PubChem Compound

Select item 22976017.

Molecular Structure Image for 8BZ1

RNA polymerase II core pre-initiation complex with the proximal +1 nucleosome (cPIC-Nuc10W)[TRANSCRIPTION]

Taxonomy:: Sus scrofa, Homo sapiens, unidentified adenovirus, Xenopus laevis

Proteins:: 26
Nucleic acids:: (DNA)
Chemicals:: 10
modified:: 2023-05-23

MMDB ID:: 229760
PDB ID:: 8BZ1

View in iCn3D Similar Structures PubMed Proteins Conserved Domains PubChem Compound

Select item 22975918.

Molecular Structure Image for 8BYQ

RNA polymerase II pre-initiation complex with the proximal +1 nucleosome (PIC-Nuc10W)[TRANSCRIPTION]

Taxonomy:: Homo sapiens, Sus scrofa, unidentified adenovirus, Xenopus laevis

Proteins:: 38
Nucleic acids:: (DNA)
Chemicals:: 18
modified:: 2023-05-23

MMDB ID:: 229759
PDB ID:: 8BYQ

View in iCn3D Similar Structures PubMed Proteins Conserved Domains PubChem Compound

Select item 22975819.

Molecular Structure Image for 8BVW

RNA polymerase II pre-initiation complex with the distal +1 nucleosome (PIC-Nuc18W)[TRANSCRIPTION]

Taxonomy:: Homo sapiens, Sus scrofa, unidentified adenovirus, Xenopus laevis

Proteins:: 40
Nucleic acids:: (DNA)
Chemicals:: 19
modified:: 2023-05-30

MMDB ID:: 229758
PDB ID:: 8BVW

View in iCn3D Similar Structures PubMed Proteins Conserved Domains PubChem Compound

Select item 22969020.

Molecular Structure Image for 7XNP

Structure of nucleosome-AAG complex (A-55I, post-catalytic state)[DNA BINDING PROTEIN/DNA]

Taxonomy:: Xenopus laevis

Proteins:: 8
Nucleic acids:: (DNA)
modified:: 2023-11-09

MMDB ID:: 229690
PDB ID:: 7XNP

View in iCn3D Similar Structures PubMed Proteins Conserved Domains

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Protein Domain Families

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